Media 000677539: Skull
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UF:Herp:192402 Typhlonectes natans
Managed by
Jaimi Gray

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Related Media (1)

Media produced from the same original imaging that created Media 000677539 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000677539 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Open Download

In Collections

Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000677539
Media type
Mesh
Object element or part
Skull
Object represented
UF:Herp:192402
Object taxonomy
Typhlonectes natans
Object organization
FLMNH Division of Herpetology
Side
NotApplicable
Orientation
--
Short description
Skull with colored elements
Full description
Skull of a caecilian, Typhlonectes natans, with bones colored and labelled to demonstrate skull anatomy. Scene by Jaimi Gray. 3D model produced from a CT scan of specimen UF herp 192402. Segmentation and mesh files generated using 3D Slicer (version 3.5). Meshes further edited in Blender. Anatomy follows Wake (2003) “The Osteology of Caecilians” in Amphibian Biology, Volume 5, Morphology H (Heatwole and Davies). Caecilian image by Zach Randall. Modelling funded by the oVert TCN project at the University of Florida (NSF DBI-1701714) https://tinyurl.com/oVertwiki.
Creator
Jaimi Gray
Date created
November 01, 2024
Date uploaded
November 01, 2024

FILE OBJECT DETAILS Field Definitions

File name
Typhlonectes-colored-skull-model.ply
File format(s)
PLY
File size
60.6 MB
Points
1511907
Polygons
3022577
Map type
--
UV coordinates
False
Vertex color
True
Bounding box dimensions
11.973, 17.033, 7.946
Centroid coordinates
0.056, 0.583, 0.788 (Vertex Mean)
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Derived directly from
Media 000649675: Head [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jaimi Gray
Data uploaded by
Jaimi Gray
Publication status
Open Download
Download reviewer
Digital Imaging Florida Museum; David Blackburn
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
Agreement File

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/677539
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://skfb.ly/oNEBE

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UF:Herp:192402 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Jaimi Gray
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
0.1Cu
Exposure time
200.098
Flux normalization
no
Pixel spacing calibration
--
Shading correction
no
Frame averaging
3
Projections
2200
Voltage
100
Power
0.02
Amperage
200
Surrounding material
air
X-ray tube type
--
Target type
Reflection
Detector type
Scintillator (Phosphor used)
Detector pixels X
2024
Detector pixels size X
0.2
Detector pixels Y
2024
Detector pixels size Y
0.2
Detector configuration
Area (single or tiled detector)
Source object distance
85.86975
Source detector distance
802.77534791
Target material
tungston
Rotation number
--
Phase contrast
no
Optical magnification
no
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000649675: Head [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
--
Software
DatosX|R
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000649675: Head [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000649675: Head [CTImageSeries] [CT] was processed with 2 activities to create derived Media 000677539: Skull [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
November 01, 2024
Software
3D Slicer and Blender
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
3D Slicer
Description

Processing Activity 2: Mesh and/or Point Cloud Texturing

Software
Blender
Description

Media produced by this event on MorphoSource

Media 000677539: Skull [Mesh] [CT] (this media)