Media 000683181: Pectoral Girdle, Head
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
KU:KUH:249588 Anolis ricordii
Managed by
Carmen Urban

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Media produced from the same original imaging that created Media 000683181 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000683181
Media type
Volumetric Image Series
Object element or part
Pectoral Girdle; Head
Object represented
KU:KUH:249588
Object taxonomy
Anolis ricordii
Object organization
KUBI Herpetology Collection
Side
Midline
Orientation
Upside down
Short description
Anterior region, unstained
Full description
Specimen is immature female. Scan of the anterior region, unstained, until the 9th dorsal vertebra. Braincase and epiphyses unfused. Slight pathology on right dentary. Complete elements include: skull, hyoid, cervical series, and pectoral girdle.
Creator
Matthew Colbert
Date created
April 13, 2023
Date uploaded
November 25, 2024

FILE OBJECT DETAILS Field Definitions

File name
Anolis_ricordii_KU249588_16BitTiffs.zip
File format(s)
ZIP archive, TIFF
File size
629 MB
Image width
462
Image height
582
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
50.300000
Y pixel spacing
50.300000
Z pixel spacing
50.300000
Pixel spacing units
Um
Slice thickness
--
Number of images in set
1,513

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (3 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carmen Urban
Data uploaded by
Carmen Urban
Publication status
Open Download
Download reviewer
Rich Glor; Ana Motta
IP holder
University of Kansas
Copyright statement
 No Copyright - Other Known Legal Restrictions
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
National Science Foundation EAR Award 2050228
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/683181
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object KU:KUH:249588 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
April 13, 2023
Software
--
Description
--
Description attachment
Description Attachment
Reference attachment
None
Exposure time
1 fps
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
6000
Voltage
120 kV
Power
--
Amperage
0.1 mA
Surrounding material
Bubblewrap
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
210.03 mm
Source detector distance
835.657 mm
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 3 activities to create derived Media 000683181: Head, Pectoral Girdle [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
April 13, 2023
Software
--
Description
Scanned in a batch of 5 specimens. This specimen was then isolated from the rest at a later date (step 3)
Description attachment
None

Processing Activity 1: Reconstruction

Software
eFX reconstruction software [proprietary NSI software]
Description

Processing Activity 2: Transform: Reflection

Software
ImageJ
Description
Reordering done as well

Processing Activity 3: Crop

Software
ImageJ
Description
Specimen isolated from other specimens within the scan

Media produced by this event on MorphoSource

Media 000683181: Head, Pectoral Girdle [CTImageSeries] [CT] (this media)