Media 000729098: Brain
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000729098: Brain
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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GENERAL DETAILS Field Definitions
Media ID
000729098
Media type
Mesh
Object element or part
brain
Object represented
Object taxonomy
Sphaerodactylus caicosensis
Object organization
Side
NotApplicable
Orientation
--
Short description
--
Full description
Sphaerodactylus caicosensis brain with optic chiasm, and olfactory nerve. Model created using diceCT data of specimen UF-H-95971
Model by Jaimi Gray. Segmentation performed and mesh generation in VGStudio Max 3.4.4. Further mesh editing and clean up in Blender (version 2.80.75).
Scanning and modelling funded by the oVert TCN project at Florida Museum of Natural History, University of Florida (NSF DBI 1701714, https://tinyurl.com/oVertwiki).
Creator
Jaimi Gray
Date created
April 10, 2025
Date uploaded
April 10, 2025
FILE OBJECT DETAILS Field Definitions
File name
gecko-brain.ply
File format(s)
PLY
File size
7.97 MB
Points
199841
Polygons
396807
Map type
--
UV coordinates
False
Vertex color
True
Bounding box dimensions
1.755, 7.960, 1.338
Centroid coordinates
0.061, -0.271, -0.019 (Bounding Box)
Units of point coordinates
No Value Entered, Millimeter Default
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
1
Number of processing events
2
(0 steps)
Derived directly from
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
UF:Herp:95971
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Dan Paluh
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
0.5
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
150
Voltage
100
Power
0.01
Amperage
100
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000029462: Element Unspecified [CTImageSeries] [Etc].
Processing Details Field Definitions
Creator
Dan Paluh
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
STEP 3: IMAGE PROCESSING
Derived
Media 000029462: Element Unspecified [CTImageSeries] [Etc]
was processed
to create
derived
Media 000729098: Brain (this media).
Processing Details Field Definitions
Creator
Jaimi Gray
Event date
April 10, 2025
Software
VGstudio Max and Blender
Description
--
Description attachment
None