Media 000459751: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000459751
Media type
Volumetric Image Series
Object element or part
Whole Body
Object represented
Object taxonomy
Lythrypnus dalli
Object organization
Side
--
Orientation
--
Short description
--
Full description
--
Creator
Ludt, William B.
Date created
August 25, 2022
Date uploaded
September 08, 2022

FILE OBJECT DETAILS Field Definitions

File name
LACM34036-1_Gobiidae_Lythrypnus_dalli.zip
File format(s)
ZIP archive, TIFF
File size
721 MB
Image width
999
Image height
1045
Color space
BlackIsZero
Color depth
8
Compression
Uncompressed
X pixel spacing
0.013998
Y pixel spacing
0.013998
Z pixel spacing
0.013998
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,380

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 50, Molecular Imaging Center (University of Southern California)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Natural History Museum of Los Angeles County
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-2001443 ("CryptoVert")
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object LACM:Fish:34036.001 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
Molecular Imaging Center (University of Southern California)
Creator
Ludt, William B.
Event date
August 12, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 2 activities to create derived Media 000459751: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Ludt, William B.
Event date
August 25, 2022
Software
Fiji
Description
Cropped and adjusted bit depth of files.
Description attachment
None

Processing Activity 1: Crop

Software
Slicer
Description
Cropped scan to just specimen.

Processing Activity 2: Bit Depth Change

Software
Fiji
Description
Changed files from 16bit to 8bit.

Media produced by this event on MorphoSource

Media 000459751: Whole Body [CTImageSeries] [CT] (this media)