Media 000680810: Pectoral Girdle, Head
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UF:Herp:59909 Anolis barbouri
Managed by
Carmen Urban

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Related Media (2)

Media produced from the same original imaging that created Media 000680810 (this media). Includes all media associated with this media through an imaging and processing workflow.

Child Media (2)

Derived media that were created from processing Media 000680810 (this media). The media immediately below this media in the imaging and processing workflow.

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Mesh
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GENERAL DETAILS Field Definitions

Media ID
000680810
Media type
Volumetric Image Series
Object element or part
Pectoral Girdle; Head
Object represented
UF:Herp:59909
Object taxonomy
Anolis barbouri
Object organization
FLMNH Division of Herpetology
Side
Midline
Orientation
--
Short description
Anterior region, unstained
Full description
Specimen is male. Scan of the anterior region, unstained, until the 8th dorsal vertebra. Complete elements include: skull, hyoid, cervical series, pectoral girdle, right forearm, right manus, and left humerus.
Creator
Matthew Colbert
Date created
March 11, 2022
Date uploaded
November 18, 2024

FILE OBJECT DETAILS Field Definitions

File name
Anolis_barbouri_UF59909_16BitTiffs.zip
File format(s)
ZIP archive, TIFF
File size
714 MB
Image width
581
Image height
619
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
20.000000
Y pixel spacing
20.000000
Z pixel spacing
20.000000
Pixel spacing units
Um
Slice thickness
--
Number of images in set
1,509

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (4 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carmen Urban
Data uploaded by
Carmen Urban
Publication status
Open Download
Download reviewer
David Blackburn ; Digital Imaging Florida Museum
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
National Science Foundation EAR Award 2050228
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
Agreement File

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/680810
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UF:Herp:59909 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
March 11, 2022
Software
--
Description
--
Description attachment
Description Attachment
Reference attachment
None
Exposure time
1 fps
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
6000
Voltage
120 kV
Power
--
Amperage
0.12 mA
Surrounding material
Bubblewrap
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
83.242 mm
Source detector distance
833.473 mm
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 4 activities to create derived Media 000680810: Head, Pectoral Girdle [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
March 11, 2022
Software
--
Description
Scanned in a batch of 6. Specimen was isolated at a later date by cropping the full scan (step 3).
Description attachment
None

Processing Activity 1: Reconstruction

Software
eFX reconstruction software [proprietary NSI software]
Description

Processing Activity 2: Transform: Reflection

Software
ImageJ
Description
Reordering done as well

Processing Activity 3: Crop

Software
ImageJ
Description
Specimen isolated from other specimens within the scan

Processing Activity 4: Transform: Rotation

Software
ImageJ
Description

Media produced by this event on MorphoSource

Media 000680810: Head, Pectoral Girdle [CTImageSeries] [CT] (this media)