Media 000430832: Braincase
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
sama:R:unreg Varanus rosenbergi
Managed by
Marc Jones

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Related Media (2)

Media produced from the same original imaging that created Media 000430832 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top)

The first media in the imaging and processing workflow that produced Media 000430832 (this media). The media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
ยท Restricted Download

Parent Media (Direct)

The media that was processed to create Media 000430832 (this media). The media immediately preceding this media in the imaging and processing workflow.

Private media inaccessible with current permissions

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GENERAL DETAILS Field Definitions

Media ID
000430832
Media type
Mesh
Object element or part
Braincase
Object represented
sama:R:unreg
Object taxonomy
Varanus rosenbergi
Object organization
South Australian Museum Australia provider for OZCAM
Side
NotApplicable
Orientation
--
Short description
--
Full description
Applied median filter 3D 26 3 to CT data. General bone volume determined using a threshold of 52 or more. Manual segmentation used to remove bits of crud. Unconstrained smoothing 4.
Creator
Marc Jones
Date created
March 14, 2022
Date uploaded
March 14, 2022

FILE OBJECT DETAILS Field Definitions

File name
Var_ros_SAMA_unreg_right_braincase__uncon4.ply
File format(s)
PLY
File size
292 MB
Points
3786831
Polygons
7576768
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
27.231, 20.829, 34.736
Centroid coordinates
20.670, 21.105, 10.663
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
2
Number of processing events
3 (0 steps)
Derived directly from
Media 000430829: Cranium [Mesh] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1076 with modified camera, Adelaide Microscopy (University of Adelaide)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Marc Jones
Data uploaded by
Marc Jones
Publication status
Restricted Download
Download reviewer
Marc Jones
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/430832
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object sama:R:unreg was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Adelaide Microscopy (University of Adelaide)
Creator
Mark Hutchinson
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
--
Voltage
100
Power
--
Amperage
90
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000164669: Head [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Mark Hutchinson
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000164669: Head [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000164669: Head [CTImageSeries] [CT] was processed to create derived private media that exists on MorphoSource but is inaccessible with current user permissions.

Processing Details Field Definitions

Creator
Marc Jones
Event date
--
Software
--
Description
Cranium
Description attachment
None

Media produced by this event on MorphoSource

Private media inaccessible with current permissions

STEP 4: IMAGE PROCESSING

Derived private media was processed to create derived Media 000430832: Braincase [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Marc Jones
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000430832: Braincase [Mesh] [CT] (this media)