Media 000606522: Skull And Mandible
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
mvz:mammal specimens:172141 Phocoena phocoena
Managed by
Jessie Maisano

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Media produced from the same original imaging that created Media 000606522 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Project
ยท Public

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GENERAL DETAILS Field Definitions

Media ID
000606522
Media type
Volumetric Image Series
Object element or part
skull and mandible
Object represented
mvz:mammal specimens:172141
Object taxonomy
Phocoena phocoena
Object organization
Museum of Vertebrate Zoology (MVZ) Mammal Collection (Arctos)
Side
--
Orientation
--
Short description
HRXCT scan of skull and mandible
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1409 Racicot: baby: Scans of the skull and mandible of Phocoena phocoena (MVZ 172141) for Rachel Racicot of San Diego State University Biology Department. Specimen scanned by Matthew Colbert on 24 March 2006. 16bit: 1024x1024 16-bit TIFF images. P250D, 418 kV, 1.8 mA, 1 brass filter, air wedge, 160% offset, 32 ms integration time, slice thickness = 0.25 mm, S.O.D. 671 mm, 1000 views, 1 ray averaged per view, 1 sample per view, inter-slice spacing = 0.22 mm, field of reconstruction 200 mm (maximum field of view 219.9899 mm), reconstruction offset 6000, reconstruction scale 7500. Total slices = 419.
Creator
Matthew Colbert
Date created
March 24, 2006
Date uploaded
February 22, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
443 MB
Image width
770
Image height
996
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.200000
Y pixel spacing
0.200000
Z pixel spacing
0.220000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
419

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS scanner with GE Titan X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Lauren Nguyen
Publication status
Restricted Download
Download reviewer
Museum of Vertebrate Zoology; Carla Cicero; Carol Spencer; Jessie Maisano; Chris Conroy
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by an NSF grant to Dr. Annalisa Berta and the American Cetacean Society and NSF grant IIS-0208675 to Tim Rowe. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/606522
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://www.digimorph.org/specimens/Phocoena_phocoena/juvenile/skull/

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mvz:mammal specimens:172141 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
March 24, 2006
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Optical magnification
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000606522: Skull And Mandible [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000606522: Skull And Mandible [CTImageSeries] [CT] (this media)