Media 000165093: Humerus, Proximal End
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
amnh:birds:SKEL-24380 Junco hyemalis pontilis
Managed by
Thomas Trombone

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Related Media (3)

Media produced from the same original imaging that created Media 000165093 (this media). Includes all media associated with this media through an imaging and processing workflow.

Other Related Media (3)

Other media associated with the original imaging that produced Media 000165093 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

CTImageSeries
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CTImageSeries
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CTImageSeries
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GENERAL DETAILS Field Definitions

Media ID
000165093
Media type
Volumetric Image Series
Object element or part
humerus, proximal end
Object represented
amnh:birds:SKEL-24380
Object taxonomy
Junco hyemalis pontilis
Object organization
AMNH Ornithology Collection
Side
Right
Orientation
--
Short description
zipped dicom stack
Full description
Migrated MorphoSource 1 Media File Title: zipped dicom stack
Creator
--
Date created
--
Date uploaded
October 12, 2020

FILE OBJECT DETAILS Field Definitions

File name
AMNH-Bird-24380-Junco-Humerus-End.zip
File format(s)
ZIP archive, DICOM
File size
553 MB
Image width
959
Image height
774
Color space
--
Color depth
16
Compression
--
X pixel spacing
0.006000
Y pixel spacing
0.006000
Z pixel spacing
0.006000
Pixel spacing units
Mm
Slice thickness
0.006
Number of images in set
458

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 35, JD Wheat Veterinary Orthopedic Research Laboratory (University of California, Davis)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Thomas Trombone
Data uploaded by
Leeann Louis
Publication status
Restricted Download
Download reviewer
--
IP holder
American Museum of Natural History
Copyright statement
 In Copyright
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
UC Berkeley Department of Integrative Biology Graduate Research Funds; NSF DGE-1752814; NSF DGE-1106400; American Society of Bone and Mineral Research 2018 Adele L. Boskey Young Investigator Award; NSF DGE-0903711; UC Berkeley Chapter of Sigma Xi Grants in Aid of Research; 2015 Award from the American Ornithologists' Union, UC Berkeley Museum of Vertebrate Zoology Karl Koford Fund, Wihelm Martens Fund, Albert Preston Hendrickson Fund, David and Marvalee Wake Fund
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M165093
MorphoSource DOI
 10.17602/M2/M165093
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object amnh:birds:SKEL-24380 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
JD Wheat Veterinary Orthopedic Research Laboratory (University of California, Davis)
Creator
Leeann Louis
Event date
--
Software
--
Description
To convert grayscale value to mg HA / (cm^3), first calulate uvalue = grayscale value / scaling factor, then calcualate mg HA / (cm^3) = uvalue * slope + intercept, where scaling factor = 4096, slope = 364.577, and intercept = -189.069
Description attachment
None
Reference attachment
None
Exposure time
900
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
--
Voltage
70
Power
--
Amperage
103
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000165093: Humerus, Proximal End [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Leeann Louis
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000165093: Humerus, Proximal End [CTImageSeries] [Etc] (this media)