Media 000622432: Whole Body
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UCM:Herp:UCM:Herp:24606 Geophis nasalis
Managed by
Emily Braker

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Media Display

Related Media (1)

Media produced from the same original imaging that created Media 000622432 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000622432 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

In Collections

Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000622432
Media type
Mesh
Object element or part
whole body
Object represented
UCM:Herp:UCM:Herp:24606
Object taxonomy
Geophis nasalis
Object organization
UCM Herpetology Collection
Side
--
Orientation
--
Short description
--
Full description
mesh from microCT volume, data inverted following CT scan Record created by batch submission.
Creator
Marquez, Patricia
Date created
April 19, 2024
Date uploaded
April 19, 2024

FILE OBJECT DETAILS Field Definitions

File name
UCM_HERP_24606_Geophis_nasalis.stl
File format(s)
STL
File size
807 MB
Points
2447044
Polygons
4880912
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
52.392, 23.894, 51.427
Centroid coordinates
27.459, 11.484, 31.443 (Vertex Mean)
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000439301: Whole Body [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm), Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Emily Braker
Data uploaded by
Emily Braker
Publication status
Restricted Download
Download reviewer
Emily Braker
IP holder
University of Colorado Museum of Natural History
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC-SA Attribution-NonCommercial-ShareAlike 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN partner NSF DBI-1701714; oMeso PEN NSF DBI-2001474
Publisher
University of Colorado Museum of Natural History
Cite as
UCM [catalog number]
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/622432
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UCM:Herp:UCM:Herp:24606 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)
Creator
Braker, Emily
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1.799999952
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
1
Projections
1601
Voltage
120
Power
1.0e-05
Amperage
83.33333333
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000439301: Whole Body [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Braker, Emily
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000439301: Whole Body [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000439301: Whole Body [CTImageSeries] [CT] was processed to create derived Media 000622432: Whole Body [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Marquez, Patricia
Event date
April 19, 2024
Software
--
Description
Reconstructed tomography to mesh, with smoothing and noise reduction
Description attachment
None

Media produced by this event on MorphoSource

Media 000622432: Whole Body [Mesh] [CT] (this media)