Media 000633095: Whole Body
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UCM:Herp:UCM:Herp:42288 Chordata indet.
Managed by
Emily Braker

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Related Media (1)

Media produced from the same original imaging that created Media 000633095 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000633095 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

In Collections

Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000633095
Media type
Mesh
Object element or part
whole body
Object represented
UCM:Herp:UCM:Herp:42288
Object taxonomy
Chordata indet.
Object organization
UCM Herpetology Collection
Side
--
Orientation
--
Short description
--
Full description
mesh from microCT volume, data inverted following CT scan Record created by batch submission.
Creator
--
Date created
--
Date uploaded
May 30, 2024

FILE OBJECT DETAILS Field Definitions

File name
UCM_HERP_42288_Craugastor_augusti_augusti_Sample2.stl
File format(s)
STL
File size
1.81 GB
Points
5628888
Polygons
11270192
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
53.686, 66.931, 27.025
Centroid coordinates
27.679, 36.851, 30.157 (Vertex Mean)
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
1 (0 steps)
Derived directly from
Media 000540143: Whole Body [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm), Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Emily Braker
Data uploaded by
Emily Braker
Publication status
Restricted Download
Download reviewer
Emily Braker
IP holder
University of Colorado Museum of Natural History
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC-SA Attribution-NonCommercial-ShareAlike 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN partner NSF DBI-1701714; oMeso PEN NSF DBI-2001474
Publisher
University of Colorado Museum of Natural History
Cite as
UCM (catalog number)
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/633095
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)
Creator
--
Event date
May 08, 2023
Software
Scout-and-Scan Control System
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
Geometry
Shading correction
--
Frame averaging
--
Projections
1601
Voltage
150
Power
0.01
Amperage
66.6666666666666
Surrounding material
--
X-ray tube type
--
Target type
Transmission
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
Area (single or tiled detector)
Source object distance
--
Source detector distance
--
Target material
tungsten
Rotation number
--
Phase contrast
--
Optical magnification
true
Acquisition type
Sequenced

Media produced by this event on MorphoSource

Media 000540143: Whole Body [CTImageSeries] [CT]

STEP 2: IMAGE PROCESSING

Raw Media 000540143: Whole Body [CTImageSeries] [CT] was processed to create derived Media 000633095: Whole Body [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Chandrashekar, Chirag
Event date
May 07, 2024
Software
Dragonfly
Description
Reconstructed tomography to mesh, with smoothing and noise reduction
Description attachment
None

Media produced by this event on MorphoSource

Media 000633095: Whole Body [Mesh] [CT] (this media)