Media 000493623: Brain
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
anu:73578 Neoceratodus fosteri
Managed by
Alice CLEMENT

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Related Media (8)

Media produced from the same original imaging that created Media 000493623 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000493623 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

Other Related Media (7)

Other media associated with the original imaging that produced Media 000493623 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Mesh
· Restricted Download
Video
· Restricted Download
Mesh
· Restricted Download
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TAGS

GENERAL DETAILS Field Definitions

Media ID
000493623
Media type
Mesh
Object element or part
Brain
Object represented
anu:73578
Object taxonomy
Neoceratodus fosteri
Object organization
Collection of Rocks, Minerals, and Fossils, Research School of Earth Sciences
Side
--
Orientation
--
Short description
Brain segmented from diceCT data of a sub-adult specimen
Full description
--
Creator
Alice Clement
Date created
January 22, 2023
Date uploaded
January 23, 2023

FILE OBJECT DETAILS Field Definitions

File name
Solid_Brain_STL.stl
File format(s)
STL
File size
5.93 MB
Points
16058
Polygons
32440
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
3.183, 1.734, 6.022
Centroid coordinates
-0.518, 1.575, -1.450
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Derived directly from
Media 000383355: Cranium [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Custom Make µCT Scanner Assembled In-House, National Laboratory for X-ray Micro Computed Tomography (Australian National University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Alice CLEMENT
Data uploaded by
Alice CLEMENT
Publication status
Restricted Download
Download reviewer
Alice CLEMENT
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
These data first appeared in: Clement AM, Nysjö J, Strand R, and Ahlberg PE. 2015. Brain – endocast relationship in the Australian lungfish, Neoceratodus forsteri, elucidated from tomographic data (Sarcopterygii: Dipnoi). PloS One 10:e0141277. DOI: 10.1371/journal.pone.0141277
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/493623
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object anu:73578 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
National Laboratory for X-ray Micro Computed Tomography (Australian National University)
Creator
Mike Turner
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 1 activity to create derived Media 000383355: Cranium [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Mike Turner
Event date
--
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstruction

Software
Description

Media produced by this event on MorphoSource

Media 000383355: Cranium [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000383355: Cranium [CTImageSeries] [CT] was processed with 1 activity to create derived Media 000493623: Brain [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Alice Clement
Event date
--
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
Description

Media produced by this event on MorphoSource

Media 000493623: Brain [Mesh] [CT] (this media)