Media 000589076: Foot
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000589076
Media type
Mesh
Object element or part
foot
Object represented
Object taxonomy
Tarsius borneanus
Object organization
Side
Right
Orientation
--
Short description
tarsus, metatarsus and phalanges from articulated leg
Full description
--
Creator
Doug Boyer
Date created
December 04, 2023
Date uploaded
December 04, 2023

FILE OBJECT DETAILS Field Definitions

File name
AMNH-M-106754_mesh-foot_smooth.ply
File format(s)
PLY
File size
39.8 MB
Points
1107497
Polygons
2185011
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
0.009, 0.012, 0.061
Centroid coordinates
0.013, 0.017, 0.061
Units of point coordinates
M

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical vivaCT 75, Stony Brook University Center for Biotechnology (Stony Brook University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
AMNH Dept of Mammalogy
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1552848 (to DM Boyer) and Duke University Trinity College of Arts and Sciences
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-106754 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
Stony Brook University Center for Biotechnology (Stony Brook University)
Creator
Doug Boyer
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
nr
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
1
Projections
nr
Voltage
nr
Power
0.0
Amperage
nr
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000050342: Foot [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Doug Boyer
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000050342: Foot [CTImageSeries] [Etc] was processed with 2 activities to create derived Media 000589076: Foot [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Doug Boyer
Event date
December 04, 2023
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
Dragonfly
Description

Processing Activity 2: Smoothing/Noise Reduction

Software
Geomgaic
Description

Media produced by this event on MorphoSource

Media 000589076: Foot [Mesh] [CT] (this media)