Media 000384689: Navicular
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
ummp:vp:101963 Carpolestes simpsoni
Managed by
Doug Boyer

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Related Media (2)

Media produced from the same original imaging that created Media 000384689 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top)

The first media in the imaging and processing workflow that produced Media 000384689 (this media). The media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

Parent Media (Direct)

The media that was processed to create Media 000384689 (this media). The media immediately preceding this media in the imaging and processing workflow.

Mesh
· Restricted Download

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000384689
Media type
Mesh
Object element or part
navicular
Object represented
ummp:vp:101963
Object taxonomy
Carpolestes simpsoni
Object organization
Museum of Paleontology
Side
Right
Orientation
--
Short description
mesh painted to show extent of cuneiform facets of navicular: red - entocuneiform, yellow - mesocuneiform, blue - ectocuneiform, green - cuboid
Full description
--
Creator
doug boyer
Date created
September 23, 2021
Date uploaded
September 23, 2021

FILE OBJECT DETAILS Field Definitions

File name
carpolestes_nav_painted.ply
File format(s)
PLY
File size
36.1 MB
Points
1168965
Polygons
395144
Map type
--
UV coordinates
False
Vertex color
True
Bounding box dimensions
2.261, 2.290, 1.581
Centroid coordinates
1.551, 1.488, 2.445
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
3
Number of processing events
4 (4 steps)
Derived directly from
Media 000380611: Navicular [Mesh] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 40, Stony Brook University Center for Biotechnology (Stony Brook University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Doug Boyer
Data uploaded by
Doug Boyer
Publication status
Restricted Download
Download reviewer
Doug Boyer
IP holder
University of Michigan Museum of Paleontology
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
BCS-1552848
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/384689
MorphoSource DOI
 10.17602/M2/M384689
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ummp:vp:101963 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Stony Brook University Center for Biotechnology (Stony Brook University)
Creator
doug boyer
Event date
--
Software
scanco medical
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
Geometry
Shading correction
No
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
Transmission
Detector type
Scintillator (Phosphor used)
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
Area (single or tiled detector)
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
No
Optical magnification
No
Acquisition type
Sequenced

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 1 activity to create derived Media 000380599: Navicular [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
doug boyer
Event date
--
Software
scano medical
Description
--
Description attachment
None

Processing Activity 1: Reconstruction

Software
scanco medical
Description

Media produced by this event on MorphoSource

Media 000380599: Navicular [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000380599: Navicular [CTImageSeries] [CT] was processed with 1 activity to create derived Media 000380602: Navicular [Mesh] [CT].

Processing Details Field Definitions

Creator
doug boyer
Event date
March 19, 2019
Software
Avizo
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
Avizo
Description

Media produced by this event on MorphoSource

Media 000380602: Navicular [Mesh] [CT]

STEP 4: IMAGE PROCESSING

Derived Media 000380602: Navicular [Mesh] [CT] was processed with 1 activity to create derived Media 000380611: Navicular [Mesh] [CT].

Processing Details Field Definitions

Creator
doug boyer
Event date
March 19, 2019
Software
geomagic
Description
--
Description attachment
None

Processing Activity 1: Patch

Software
geomagic
Description

Media produced by this event on MorphoSource

Media 000380611: Navicular [Mesh] [CT]

STEP 5: IMAGE PROCESSING

Derived Media 000380611: Navicular [Mesh] [CT] was processed with 1 activity to create derived Media 000384689: Navicular [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
doug boyer
Event date
September 23, 2021
Software
blender
Description
--
Description attachment
None

Processing Activity 1: Mesh and/or Point Cloud Texturing

Software
blender
Description

Media produced by this event on MorphoSource

Media 000384689: Navicular [Mesh] [CT] (this media)