Media 000064753: Mt1
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
AMNH:Mammals:M-51202 Pan troglodytes schweeinfurthii
Managed by
AMNH Mammalogy Department

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Media produced from the same original imaging that created Media 000064753 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Team
· Public
Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000064753
Media type
Mesh
Object element or part
Mt1
Object represented
AMNH:Mammals:M-51202
Object taxonomy
Pan troglodytes schweeinfurthii
Object organization
AMNH Mammal Collections
Side
Right
Orientation
--
Short description
Mt1
Full description
Migrated MorphoSource 1 Media File Title: Mt1 Migrated MorphoSource 1 Media Group Title: Raw image data Migrated MorphoSource 1 Media Group Description: Any 3D surface uploaded for this specimen/element was produced with either the Isosurface or LabelField functions in AMIRA v.5.6 or later, and is best regarded as minimally processed for smoothing and hole filling (unless otherwise noted). If raw image data (i.e., slices) for this specimen/element have been uploaded, they may appear as a single 3D Tiff format file produced in AMIRA v.5.6 or later. This file can be opened in most versions of AMIRA or AVIZO without needing additional input for scale (i.e., the voxel resolution is recognized). This file can also be opened in ImageJ but will require the user to scale the images with provided information on voxel dimensions prior to working with them.
Creator
--
Date created
--
Date uploaded
November 28, 2018

FILE OBJECT DETAILS Field Definitions

File name
Pan-troglodytes-schweinfurthii-M-AMNH-51202-Mt1-R.ply
File format(s)
PLY
File size
151 MB
Points
1993326
Polygons
3985688
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
52.502, 35.417, 20.218
Centroid coordinates
42.839, 46.374, 114.531
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 50, Molecular Imaging Center (University of Southern California)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
AMNH Mammalogy Department
Data uploaded by
Biren Patel
Publication status
Restricted Download
Download reviewer
Neil Duncan; Biren Patel
IP holder
AMNH Dept of Mammalogy
Copyright statement
 Copyright Undetermined
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
National Science Foundation [BCS 1317047 (to Biren Patel), BCS 1539741 (to Caley Orr)], the L.S.B. Leakey Foundation (to Biren Patel), the Wenner-Gren Foundation (to Caley Orr), and the University of Southern California (to Biren Patel).
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Biren Patel provided access to these data. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M64753
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-51202 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Molecular Imaging Center (University of Southern California)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000064753: Mt1 [Mesh] [Etc] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000064753: Mt1 [Mesh] [Etc] (this media)