Media 000365359: Head
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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GENERAL DETAILS Field Definitions

Media ID
000365359
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Cynopterus sphinx
Object organization
Side
NotApplicable
Orientation
coronal planes through head
Short description
diceCT, whole head
Full description
resliced diceCT, aligned to histology
Creator
--
Date created
--
Date uploaded
May 28, 2021

FILE OBJECT DETAILS Field Definitions

File name
Cyno1_stained_aligned_TIFs.zip
File format(s)
ZIP archive, TIFF
File size
1.31 GB
Image width
1400
Image height
1353
Color space
BlackIsZero
Color depth
8
Compression
LZW
X pixel spacing
0.019560
Y pixel spacing
0.019560
Z pixel spacing
0.019560
Pixel spacing units
--
Slice thickness
--
Number of images in set
2,090

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Valerie B. DeLeon and Timothy D. Smith
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
NSF BCS-1830894, 1830919
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object l-ts:Cyno1 was imaged to create raw Media 000365356: Head [CTImageSeries] [CT].

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Valerie DeLeon
Event date
July 05, 2018
Software
--
Description
diffusible iodine-based contrast-enhanced computed tomography
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
100
Power
140
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
0.02564
Detector pixels Y
0.02564
Detector pixels size Y
0.02564
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

Media produced by this event on MorphoSource

STEP 2: IMAGE PROCESSING

Raw Media 000365356: Head [CTImageSeries] [CT] was processed to create derived Media 000365359: Head [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Valerie DeLeon
Event date
May 28, 2021
Software
Amira
Description
"Resliced" CT stack, aligned to histology
Description attachment
None

Media produced by this event on MorphoSource

Media 000365359: Head [CTImageSeries] [CT] (this media)