Media 000379834: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
l-ap:Fr86.3 Sminthopsis crassicaudata
Managed by
Laura Cook

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Media produced from the same original imaging that created Media 000379834 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000379834
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
l-ap:Fr86.3
Object taxonomy
Sminthopsis crassicaudata
Object organization
Laboratory of Andrew Pask
Side
--
Orientation
--
Short description
--
Full description
--
Creator
Newton, Axel; Cook, Laura; Hipsley, Christy
Date created
June 28, 2018
Date uploaded
August 25, 2021

FILE OBJECT DETAILS Field Definitions

File name
Fr86.3_D4_tiffs.zip
File format(s)
ZIP archive, TIFF
File size
904 MB
Image width
1093
Image height
1156
Color space
BlackIsZero
Color depth
16
Compression
PackBits
Series type
Reconstructed image stack
X pixel spacing
0.006182
Y pixel spacing
0.006182
Z pixel spacing
0.006182
Pixel spacing units
--
Slice thickness
--
Number of images in set
1,308

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix nanotom m, Melbourne Trace Analysis for Chemical, Earth and Environmental Sciences (TrACEES) Platform (University of Melbourne)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Laura Cook
Data uploaded by
Laura Cook
Publication status
Open Download
Download reviewer
Laura Cook
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DE180100629; DP160103683
Publisher
Laboratory of Andrew Pask
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/379834
MorphoSource DOI
Not assigned
External identifier
https://doi.org/10.1038/s42003-021-02506-2
External media URL
https://doi.org/10.6084/m9.figshare.14705202

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object l-ap:Fr86.3 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Melbourne Trace Analysis for Chemical, Earth and Environmental Sciences (TrACEES) Platform (University of Melbourne)
Creator
Cook, Laura
Event date
June 28, 2018
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
1199 2D x-ray projections
Voltage
45
Power
--
Amperage
300
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
Diamond
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
Sequenced

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000379834: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Hipsley, Christy, Newton, Axel, Cook, Laura
Event date
June 28, 2018
Software
VGSTUDIO
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000379834: Whole Body [CTImageSeries] [CT] (this media)