Media 000381888: Neurocranium
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000381888: Neurocranium
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
TAGS
GENERAL DETAILS Field Definitions
Media ID
000381888
Media type
Volumetric Image Series
Object element or part
Neurocranium
Object represented
Object taxonomy
Gogodipterus paddyensis
Object organization
Side
--
Orientation
--
Short description
--
Full description
--
Creator
Jeremy Shaw
Date created
November 07, 2019
Date uploaded
September 06, 2021
FILE OBJECT DETAILS Field Definitions
File name
TIFFS.zip
File format(s)
ZIP archive, TIFF
File size
4.93 GB
Image width
1492
Image height
1009
Color space
BlackIsZero
Color depth
16
Compression
LZW
X pixel spacing
41.520000
Y pixel spacing
41.520000
Z pixel spacing
41.520000
Pixel spacing units
Um
Slice thickness
--
Number of images in set
2,000
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm), Centre for Microscopy, Characterisation and Analysis (CMCA) (University of Western Australia)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
Flinders University Impact Seed Funding (awarded to Alice Clement)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
wam:palaeontology:70.4.250
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
Centre for Microscopy, Characterisation and Analysis (CMCA) (University of Western Australia)
Creator
Jeremy Shaw
Event date
November 07, 2019
Software
--
Description
Gogodipterus paddyensis was scanned using X-ray micro-computed tomography (X-ray µCT) at the Centre for Microscopy, Characterisation and Analysis (CMCA) at The University of Western Australia (UWA) in Perth, Australia in 2019. Parameters used were 80kV and 7W using a Versa 520 XRM (Zeiss, Pleasanton, CA, USA). An LE2 beam filter was used to mitigate beam hardening and increase contrast. Source-sample and sample-detector distances were set to -73 and 48 mm, respectively, which together with the 0.4X objective and 2x camera binning, resulted in a final pixel resolution of 41.52 µm. Suitable image intensity was achieved with an exposure of 1 s and a total of 2401 projections were collected through 360o for the tomography. Owing to its large size, the sample was scanned in wide stitch mode, with five vertical segments needed to cover the full height. In addition, auto referencing was disabled, with a single reference collection captured prior to scanning. Reconstruction and stitching were achieved automatically by the software using default settings. Total scan time was 21h 38 min.
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
1 s
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
2401
Voltage
80kV
Power
7W
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000381888: Neurocranium [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
Jeremy Shaw
Event date
November 07, 2019
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000381888: Neurocranium [CTImageSeries] [CT] (this media)