Media 000385499: Emys
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
MVZ:Herp:MVZ:Herp:129944 Emys blandingii
Managed by
Carol Spencer

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Related Media (6)

Media produced from the same original imaging that created Media 000385499 (this media). Includes all media associated with this media through an imaging and processing workflow.

Child Media (6)

Derived media that were created from processing Media 000385499 (this media). The media immediately below this media in the imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000385499
Media type
Volumetric Image Series
Object element or part
emys
Object represented
MVZ:Herp:MVZ:Herp:129944
Object taxonomy
Emys blandingii
Object organization
Museum of Vertebrate Zoology (MVZ) Herp Collection (Arctos)
Side
NotApplicable
Orientation
--
Short description
microCT volume and derivatives
Full description
Migrated MorphoSource 1 Media File Title: zipped tiff stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives Record created by batch submission.
Creator
--
Date created
--
Date uploaded
September 27, 2021

FILE OBJECT DETAILS Field Definitions

File name
MVZ-herps-129944_Emys-blandingii.zip
File format(s)
ZIP archive, TIFF
File size
2.96 GB
Image width
1266
Image height
756
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.121617
Y pixel spacing
0.121617
Z pixel spacing
0.121617
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
2,000

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carol Spencer
Data uploaded by
Shion Otsuka
Publication status
Restricted Download
Download reviewer
Museum of Vertebrate Zoology; Carol Spencer; Carla Cicero
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Educational Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN; NSF DBI-1701714; NSF DBI-1701713
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Museum of Vertebrate Zooology at Berkeley provided access to these data , the collection of which was funded by oVert TCN; NSF DBI-1701714; NSF DBI-1701713.. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/385499
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object MVZ:Herp:MVZ:Herp:129944 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
University of Michigan Museum of Zoology, Research Museums Center (University of Michigan)
Creator
Ramon Nagesan, Shion Otsuka
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
unknown
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
unknown
Projections
1601
Voltage
85
Power
0.017
Amperage
200
Surrounding material
amaranth
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000385499: Emys [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Ramon Nagesan, Shion Otsuka
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000385499: Emys [CTImageSeries] [CT] (this media)