Media 000508903: Cranium
Restricted Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000508903: Cranium
Restricted Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
TAGS
GENERAL DETAILS Field Definitions
Media ID
000508903
Media type
Mesh
Object element or part
cranium
Object represented
Object taxonomy
Neovison vison
Object organization
Side
--
Orientation
--
Short description
Cranium of American mink (Neovison vison)
Full description
--
Creator
Gálvez-López, Eloy
Date created
October 08, 2020
Date uploaded
March 29, 2023
FILE OBJECT DETAILS Field Definitions
File name
Nvi_SPM_L1_cranium.ply
File format(s)
PLY
File size
34.9 MB
Points
991533
Polygons
1896060
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
54.835, 59.857, 78.879
Centroid coordinates
32.474, 45.039, 34.907
Units of point coordinates
--
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
1
Number of processing events
2
(0 steps)
Derived directly from
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, School of Earth Sciences Xray Tomography (XTM) Facility (University of Bristol)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 835736.
Publisher
Gálvez-López, Eloy
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
L-SP:L1
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
School of Earth Sciences Xray Tomography (XTM) Facility (University of Bristol)
Creator
Gálvez-López, Eloy
Event date
July 16, 2020
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
100
Power
--
Amperage
400
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000508896: Skull [CTImageSeries] [CT].
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
STEP 3: IMAGE PROCESSING
Derived
Media 000508896: Skull [CTImageSeries] [CT]
was processed
to create
derived
Media 000508903: Cranium [Mesh] [CT] (this media).
Processing Details Field Definitions
Creator
Gálvez-López, Eloy
Event date
October 08, 2020
Software
--
Description
The CT stack was segmented in ORS Dragonfly using the "Split at Otsu" feature to isolate bone material, then the cranium was manually isolated from other elements. The original mesh was simplified to ca. 2M triangles in Avizo and then imported to Geomagic Studio, where the "Mesh Doctor" feature was used to fix spikes, etc.
Description attachment
None
Media produced by this event on MorphoSource
Media 000508903: Cranium [Mesh] [CT] (this media)