Media 000549155: Element Unspecified
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000549155: Element Unspecified
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Project
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TAGS
GENERAL DETAILS Field Definitions
Media ID
000549155
Media type
Volumetric Image Series
Object element or part
--
Object represented
Object taxonomy
Tyto alba
Object organization
Side
--
Orientation
--
Short description
Specimen of Tyto alba with 360° left head turn
Full description
Specimen of Tyto alba with 360° head turn to the left. Part of study of the three-dimensional configuration of owl's neck in extreme head turn.
Creator
--
Date created
April 01, 2019
Date uploaded
August 15, 2023
FILE OBJECT DETAILS Field Definitions
File name
Tyto-alba-twist.zip
File format(s)
ZIP archive, DICOM
File size
5.2 GB
Image width
1324
Image height
1280
Color space
--
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.062650
Y pixel spacing
0.062650
Z pixel spacing
0.062650
Pixel spacing units
Mm
Slice thickness
0.0626502
Number of images in set
2,022
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(1 step)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric Phoenix V|tome|x M300, All Russian Scientific Research Institute of Radio Electronics FGBU VNIIR (All Russian Scientific Research Institute of Radio Electronics FGBU VNIIR)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Aleksandra Panyutina
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
IEE:L-ABS:LHE-3530-A
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
All Russian Scientific Research Institute of Radio Electronics FGBU VNIIR (All Russian Scientific Research Institute of Radio Electronics FGBU VNIIR)
Creator
--
Event date
April 01, 2019
Software
Phoenix datos|x
Description
Specimen of Tyto alba with 360° head turn to the left. Part of study of the three-dimensional configuration of owl's neck in extreme head turn.
Description attachment
Reference attachment
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
3
Projections
1600
Voltage
110
Power
--
Amperage
110
Surrounding material
PET bottle and polyethylene pieces
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
2024
Detector pixels size X
--
Detector pixels Y
2024
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
with 1 activity
to create
derived
Media 000549155: Element Unspecified [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
April 01, 2019
Software
Phoenix datos|x
Description
Obtained raw projection data from the scanner (back projections) were converted into volume with the software shipped with the Phoenix V|tome|x scanner (Phoenix datos|x). Then, series of cross-section images (slices) were exported from the volume and saved in DICOM format. At this step, the software always reverses the right-left polarity (Z axis direction) of the specimen relative to its cranial-caudal polarity. Thus, in DICOM, the head turn to the right side is displayed as if it was the turn to the left. The true direction of turn is pointed out in the respective description.
Description attachment
None
Processing Activity 1: Crop
Software
Phoenix datos|x
Description