Media 000531816: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Managed by

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GENERAL DETAILS Field Definitions

Media ID
000531816
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
Object taxonomy
Thamnophilus caerulescens gilvigaster
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
microCT volume and derivatives, fluid-preserved bird. Specimen contains shot and is heavily dissected.
Creator
Magallanes, Isaac
Date created
June 14, 2023
Date uploaded
June 21, 2023

FILE OBJECT DETAILS Field Definitions

File name
FMNH_B_107192_Thamnophilus_ImageStack.zip
File format(s)
ZIP archive, TIFF
File size
67 MB
Image width
289
Image height
281
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.107192
Y pixel spacing
0.107192
Z pixel spacing
0.107192
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,847

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s, UChicago PaleoCT (University of Chicago)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
IP holder
Field Museum of Natural History
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
--
Publisher
--
Cite as
Field Museum of Natural History provided access to these data , the collection of which was funded by oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object FMNH:Birds:107192 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UChicago PaleoCT (University of Chicago)
Creator
Magallanes, Isaac
Event date
June 14, 2023
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.25
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
600
Voltage
120
Power
0.024
Amperage
260
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000531816: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Magallanes, Isaac
Event date
June 14, 2023
Software
VGStudio Max 3.3
Description
calibrated histogram to highest and lowest densities, cropped ROI down to the specimen
Description attachment
None

Media produced by this event on MorphoSource

Media 000531816: Whole Body [CTImageSeries] [CT] (this media)