Media 000571693: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000571693
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
Object taxonomy
Lophogobius cyprinoides
Object organization
Side
--
Orientation
--
Short description
--
Full description
LACM 57146-2 Gobiidae Lophogobius cyprinoides
Creator
M. Wilson
Date created
October 17, 2023
Date uploaded
October 17, 2023

FILE OBJECT DETAILS Field Definitions

File name
LACM_57146_2_Gobiidae_Lophogobius_cyprinoides.zip
File format(s)
ZIP archive, TIFF
File size
5.1 GB
Image width
1128
Image height
738
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.100000
Y pixel spacing
0.100000
Z pixel spacing
0.100000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,947

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1276, Cornell University Biotechnology Resource Center (Cornell University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
Natural History Museum of Los Angeles County
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On Any Repository
Funding attribution
NSF DBI-2001443 (“CryptoVert”)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object LACM:Fish:57146.002 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
Cornell University Biotechnology Resource Center (Cornell University)
Creator
Teresa Porri
Event date
July 14, 2023
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
850ms
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
100kV
Power
--
Amperage
200uA
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 2 activities to create derived Media 000571693: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
M. Wilson
Event date
October 17, 2023
Software
Slicer; Fiji
Description
--
Description attachment
None

Processing Activity 1: Bit Depth Change

Software
Fiji
Description
Converted images from 16bit to 8bit

Processing Activity 2: Crop

Software
Slicer
Description
Cropped images to single individual specimen

Media produced by this event on MorphoSource

Media 000571693: Whole Body [CTImageSeries] [CT] (this media)