Media 000636278: Hand
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000636278
Media type
Volumetric Image Series
Object element or part
hand
Object represented
Object taxonomy
Tachyglossus sp.
Side
--
Orientation
--
Short description
HRXCT scan -- hand
Full description
University of Texas High-Resolution X-ray CT Facility Archive 2601 Rowe: tachy: Scans of the hand of Tachyglossus (TMM M-1741; near Perth, Western Australia) for Tim Rowe of UT DOGS. Specimen scanned by Matthew Colbert 16 November 2011. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.22 mA, intensity control off, high-power mode, no filter, air wedge, no offset, slice thickness 1 line ( = 0.03414 mm), S.O.D. 98 mm, 1400 views, 1 sample per view, inter-slice spacing 1 line ( = 0.03414 mm), field of reconstruction 32 mm, (maximum field of view 32.60082 mm), reconstruction offset 5500, reconstruction scale 5500. Acquired with 31 slices per rotation and 25 slices per set. Ring-removal processing done by Julia Holland based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul” with default parameters. Deleted first 3 and last 3 duplicate slices from each rotation. Rotation correction processing done by Julia Holland using IDL routine “DoRotationCorrection.” Deleted first 4 blank slices. Total final slices = 1571.
Creator
Matthew Colbert
Date created
November 16, 2011
Date uploaded
June 10, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
1.86 GB
Image width
816
Image height
997
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.031250
Y pixel spacing
0.031250
Z pixel spacing
0.034140
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,571

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Texas Memorial Museum
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for Tim Rowe. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
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External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object TMM:M:1741 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
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Description
--
Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000636278: Hand [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000636278: Hand [CTImageSeries] [CT] (this media)