Media 000638023: Skull
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
mcz:vp:2040 Pantylus sp.
Managed by
Jessie Maisano

Request Download Add to Cart

Login or create an account to download files

Media Display

Related Media (0)

Media produced from the same original imaging that created Media 000638023 (this media). Includes all media associated with this media through an imaging and processing workflow.

No related media found.

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000638023
Media type
Volumetric Image Series
Object element or part
skull
Object represented
mcz:vp:2040
Object taxonomy
Pantylus sp.
Object organization
MCZ Vertebrate Paleontology
Side
--
Orientation
--
Short description
HRXCT scan of skull
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1806 Olori: pant2040: Scans of the skull of Pantylus (MCZ 2040; Archer City Bonebed, Archer Co., Texas, coll. E.C. Olsen 10 April 1952) for Jen Olori of the Department of Geological Sciences, The University of Texas at Austin. Specimen scanned by Matthew Colbert 28 January 2008. 16bit: 1024x1024 16-bit TIFF images. II, 210 kV, 0.12 mA, intensity control on, high-power mode, no filter, air wedge, no offset, slice thickness 1 line (= 0.09027 mm), S.O.D. 260 mm, 1400 views, 4 samples per view, inter-slice spacing 1 line (= 0.09027 mm), field of reconstruction 86 mm (maximum field of view 86.2 mm), reconstruction offset 5400, reconstruction scale 3400. Acquired with 31 slices per rotation and 25 slices per set. Ring-removal processing done by Rachel Racicot based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul” with parameters “binwidth=21, bestof5=11”. Deleted last six duplicate slices of each rotation. Post-reconstruction ring correction applied by Rachel Racicot using the parameters oversample=3, binwidth=31, sectors=60, smoothing=median. First five and last two blank slices deleted. Total final slices = 393.
Creator
Matthew Colbert
Date created
January 28, 2008
Date uploaded
June 18, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
430 MB
Image width
834
Image height
887
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.083980
Y pixel spacing
0.083980
Z pixel spacing
0.090270
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
393

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Zachariah Saiz
Publication status
Restricted Download
Download reviewer
Christina Byrd; Jessica Maisano
IP holder
President and Fellows of Harvard College (Copyright and License)
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC-ND Attribution-NonCommercial-NoDerivs 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for Jennifer Olori. oUTCT provided access to these data, funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/638023
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mcz:vp:2040 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000638023: Skull [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000638023: Skull [CTImageSeries] [CT] (this media)