Media 000615291: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
ANSP:FISH:168862 Steindachneridion scripta
Managed by
Jessie Maisano

Request Download Add to Cart

Login or create an account to download files

Media Display

Related Media (0)

Media produced from the same original imaging that created Media 000615291 (this media). Includes all media associated with this media through an imaging and processing workflow.

No related media found.

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000615291
Media type
Volumetric Image Series
Object element or part
head
Object represented
ANSP:FISH:168862
Object taxonomy
Steindachneridion scripta
Object organization
Academy of Natural Sciences of Drexel Ichthyology Collection
Side
--
Orientation
--
Short description
HRXCT scan - head
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1677 Lundberg: stein: Scans of the head of a preserved Steindachneridion scripta (ANSP 168862; Brazil; Santa Catarina, Rio Uruguay at Ita; coll. A. Ramires et al. 1 October 1988) for John Lundberg of the Academy of Natural Sciences, Department of Ichthyology. Specimen scanned by Matthew Colbert 7 May 2007. 16bit: 1024x1024 16-bit TIFF images. II, 200 kV, 0.11 mA, intensity control on, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.1342 mm), S.O.D. 193 mm, 1400 views, 3 samples per view, inter-slice spacing 2 lines (= 0.1342 mm), field of reconstruction 63 mm (maximum field of view 63.99348 mm), reconstruction offset 3700, reconstruction scale 7470. Acquired with 19 slices per rotation and 15 slices per set. Flash and ring-removal processing done by Alison Mote based on correction of raw sinogram data using IDL routines “RK_SinoDeSpike” and “RK_SinoRingProcSimul” both with default parameters. Reconstructed with an angle of 8 degrees. Deleted the last four duplicate slices of each rotation and blank slices 1-15. Total final slices = 750.
Creator
Matthew Colbert
Date created
May 07, 2007
Date uploaded
March 26, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
936 MB
Image width
967
Image height
824
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.061500
Y pixel spacing
0.061500
Z pixel spacing
0.134200
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
750

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Lauren Nguyen
Publication status
Restricted Download
Download reviewer
Kyle Luckenbill; Jessie Maisano
IP holder
Academy of Natural Sciences of Drexel University
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, DEB-0089612
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant DEB-0089612 to John Lundberg. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/615291
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://digimorph.org/specimens/Steindachneridion_scriptum/

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ANSP:FISH:168862 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
May 07, 2007
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000615291: Head [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000615291: Head [CTImageSeries] [CT] (this media)