Media 000610373: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000610373
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Austroglanis gilli
Side
--
Orientation
--
Short description
HRXCT scan of whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1192 Lundberg Austroglanis: Scans of the head of Austroglanis gilli (SAIAB 58357, alcoholic) for Dr. John Lundberg of the Academy of Natural Sciences, Philadelphia, PA. Specimen scanned by Matthew Colbert 4 March 2005. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.05802 mm), S.O.D. 85 mm, 1600 views, 2 samples per view, inter-slice spacing 2 lines (= 0.05802 mm), field of reconstruction 27 mm (maximum field of view 27.85481 mm), reconstruction offset 5800, reconstruction scale 1940. Acquired with 15 slices per rotation. Drift- and ring-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routines “RK_SinoDeDrift” and “RK_SinoRingProcSimul,” both with default parameters. Reconstructed with default parameters. Rotation correction processing done by Susan Garlock using IDL routine “DoRotationCorrection”. Images flipped because specimen scanned bottom to top. Total slices = 690.
Creator
Matthew Colbert
Date created
March 04, 2005
Date uploaded
March 12, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
835 MB
Image width
1024
Image height
816
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.026370
Y pixel spacing
0.026370
Z pixel spacing
0.058020
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
690

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
South African Institute for Aquatic Biodiversity
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, DEB-0089612
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant DEB-0089612 to John Lundberg. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object saiab:fish:58357 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
March 04, 2005
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
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Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
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Detector configuration
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Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000610373: Head [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000610373: Head [CTImageSeries] [CT] (this media)