Media 000602347: Forelimb
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
YPM:VZ:YPM MAM 015939 Pan troglodytes
Managed by
Nelson Rios

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Related Media (9)

Media produced from the same original imaging that created Media 000602347 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000602347 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
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Other Related Media (8)

Other media associated with the original imaging that produced Media 000602347 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Image
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Mesh
· Restricted Download
Mesh
· Restricted Download
Mesh
· Restricted Download
Mesh
· Restricted Download
Mesh
· Restricted Download
Mesh
· Restricted Download
Mesh
· Restricted Download
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GENERAL DETAILS Field Definitions

Media ID
000602347
Media type
Mesh
Object element or part
Forelimb
Object represented
YPM:VZ:YPM MAM 015939
Object taxonomy
Pan troglodytes
Object organization
Vertebrate Zoology Division - Mammalogy, Yale Peabody Museum
Side
Right
Orientation
--
Short description
--
Full description
Skeleton of the right arm of a chimpanzee, Pan troglodytes (specimen YPM Mam 015939), a fluid-preserved specimen from the Peabody Museum of Natural History, with elements colored to demonstrate forelimb anatomy. Note that the fingertips of this specimen were removed. This scene was created by Jaimi Gray (oVert team) using pre-existing mesh files (see below) which were edited to separate, reposition, and color elements in Blender and Meshlab. Original model by Karina Riddell using Volumegraphics VGStudioMax 3.3 from CT scan produced at the Yale Translational Research Imaging Center (Y-TRIC). Scanning and modelling of this specimen funded by the oVert project at the University of Florida (NSF DBI 1701714, https://tinyurl.com/oVertwiki).
Creator
Jaimi Gray
Date created
February 06, 2024
Date uploaded
February 06, 2024

FILE OBJECT DETAILS Field Definitions

File name
chimpanzee_forelimb_with_color.ply
File format(s)
PLY
File size
3 MB
Points
62824
Polygons
125882
Map type
--
UV coordinates
True
Vertex color
True
Bounding box dimensions
558.379, 290.900, 82.793
Centroid coordinates
-1.796, 21.869, 25.085
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000058004: Full Body [CTImageSeries] [Etc]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric Discovery NM/CT 570c, Yale Translational Research Imaging Center (Y-TRIC) (Yale University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Nelson Rios
Data uploaded by
Jaimi Gray
Publication status
Restricted Download
Download reviewer
Greg Watkins-Colwell
IP holder
Yale University
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/602347
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://skfb.ly/6U8on

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object YPM:VZ:YPM MAM 015939 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Yale Translational Research Imaging Center (Y-TRIC) (Yale University)
Creator
Doug Boyer, Attila Feher, and Nabil Boutagy
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
nr
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
nr
Projections
nr
Voltage
120
Power
0.0
Amperage
nr
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000058004: Full Body [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Doug Boyer, Attila Feher, and Nabil Boutagy
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000058004: Full Body [CTImageSeries] [Etc]

STEP 3: IMAGE PROCESSING

Derived Media 000058004: Full Body [CTImageSeries] [Etc] was processed to create derived Media 000602347: Forelimb [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
February 06, 2024
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000602347: Forelimb [Mesh] [CT] (this media)