Media 000070863: Whole Alcohol Preserved Specimen
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
MVZ:Mamm:MVZ:Mamm:32885 Ornithorhynchus Blumenbach Ornithorhynchus anatinus
Managed by
Carol Spencer

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Media produced from the same original imaging that created Media 000070863 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000070863
Media type
Volumetric Image Series
Object element or part
Whole alcohol preserved specimen
Object represented
MVZ:Mamm:MVZ:Mamm:32885
Object taxonomy
Ornithorhynchus Blumenbach Ornithorhynchus anatinus
Object organization
Museum of Vertebrate Zoology (MVZ) Mammal Collection (Arctos)
Side
--
Orientation
--
Short description
Zipped tomogram stack (16bit tiffs)
Full description
Migrated MorphoSource 1 Media File Title: Zipped tomogram stack (16bit tiffs) Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives
Creator
--
Date created
--
Date uploaded
February 27, 2019

FILE OBJECT DETAILS Field Definitions

File name
Z-Stack.zip
File format(s)
ZIP archive, TIFF
File size
2.21 GB
Image width
1356
Image height
1445
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.095941
Y pixel spacing
0.095941
Z pixel spacing
0.095941
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,179

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carol Spencer
Data uploaded by
Edward Stanley
Publication status
Restricted Download
Download reviewer
Museum of Vertebrate Zoology; Carol Spencer; Carla Cicero; Chris Conroy
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714; NSF DBI-1702442; oVert TCN
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Museum of Vertebrate Zoology provided access to these dataoriginally appearing in , the collection of which was funded by oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M70863
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object MVZ:Mamm:MVZ:Mamm:32885 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.333096
Flux normalization
Yes
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
3
Projections
2000
Voltage
100
Power
0.025
Amperage
250
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000070863: Whole Alcohol Preserved Specimen [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000070863: Whole Alcohol Preserved Specimen [CTImageSeries] [Etc] (this media)