Media 000602353: Forelimb
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
MVZ:Mamm:MVZ:Mamm:32885 Ornithorhynchus Blumenbach Ornithorhynchus anatinus
Managed by
Jaimi Gray

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Related Media (2)

Media produced from the same original imaging that created Media 000602353 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000602353 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Restricted Download

Other Related Media (1)

Other media associated with the original imaging that produced Media 000602353 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Mesh
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Media List
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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000602353
Media type
Mesh
Object element or part
Forelimb
Object represented
MVZ:Mamm:MVZ:Mamm:32885
Object taxonomy
Ornithorhynchus Blumenbach Ornithorhynchus anatinus
Object organization
Museum of Vertebrate Zoology (MVZ) Mammal Collection (Arctos)
Side
Right
Orientation
--
Short description
Right forelimb with elements colored to demonstrate forelimb anatomy
Full description
The skeleton of the forelimb of a platypus, Ornithorhynchus anatinus (specimen MVZ:mamm:32885), a fluid-preserved specimen from the Museum of Vertebrate Zoology, with elements colored to demonstrate forelimb anatomy. Scene created by Jaimi Gray (oVert team), using pre-existing mesh files (see below), which were separated, repositioned, and coloured in Meshlab and Blender. The original model was made by Karina Riddell using Volumegraphics VGStudioMax 3.3 from a CT scan produced by a Phoenix V|Tome|X S. The model was generated to complement a learning activity designed during the UF Center for Precollegiate Education and Training workshop “3D Vertebrates: From Museum Shelves to Classrooms.” Scanning and modeling of this specimen was funded by the oVert project at the University of Florida (NSF DBI 1701714, https://tinyurl.com/oVertwiki).
Creator
Jaimi Gray
Date created
February 06, 2024
Date uploaded
February 06, 2024

FILE OBJECT DETAILS Field Definitions

File name
platypus_forelimb_with_color.ply
File format(s)
PLY
File size
20.6 MB
Points
474751
Polygons
781425
Map type
--
UV coordinates
True
Vertex color
True
Bounding box dimensions
86.415, 80.412, 28.355
Centroid coordinates
8.607, 7.727, 1.712
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000065299: Whole Body [CTImageSeries] [Etc]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jaimi Gray
Data uploaded by
Jaimi Gray
Publication status
Restricted Download
Download reviewer
Carol Spencer; Museum of Vertebrate Zoology; Chris Conroy; Carla Cicero
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Non-Commercial Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI-1701714 ("oVert: TCN" parent grant)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/602353
MorphoSource DOI
Not assigned
External identifier
https://skfb.ly/6WWSs
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object MVZ:Mamm:MVZ:Mamm:32885 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.333096
Flux normalization
Yes
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
3
Projections
2000
Voltage
100
Power
0.025
Amperage
250
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000065299: Whole Body [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Edward Stanley
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000065299: Whole Body [CTImageSeries] [Etc]

STEP 3: IMAGE PROCESSING

Derived Media 000065299: Whole Body [CTImageSeries] [Etc] was processed to create derived Media 000602353: Forelimb [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
February 06, 2024
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000602353: Forelimb [Mesh] [CT] (this media)