Media 000084973: Metatarsal 2
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
AMNH:Mammals:M-28252 Pongo pygmaeus pygmaeus
Managed by
AMNH Mammalogy Department

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Related Media (1)

Media produced from the same original imaging that created Media 000084973 (this media). Includes all media associated with this media through an imaging and processing workflow.

Child Media (1)

Derived media that were created from processing Media 000084973 (this media). The media immediately below this media in the imaging and processing workflow.

Mesh
· Restricted Download

In Collections

Team
· Public
Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000084973
Media type
Volumetric Image Series
Object element or part
Metatarsal 2
Object represented
AMNH:Mammals:M-28252
Object taxonomy
Pongo pygmaeus pygmaeus
Object organization
AMNH Mammal Collections
Side
Left
Orientation
--
Short description
Zipped Tiff Stack
Full description
Migrated MorphoSource 1 Media File Title: Zipped Tiff Stack Migrated MorphoSource 1 Media Group Title: microCT Volume and Derivative Mesh File Migrated MorphoSource 1 Media File Description: Correct chirality Migrated MorphoSource 1 Media Group Description: Correct chirality
Creator
--
Date created
--
Date uploaded
August 15, 2019

FILE OBJECT DETAILS Field Definitions

File name
AMNH-28252-Pongo-L-MT-II.zip
File format(s)
ZIP archive, TIFF
File size
162 MB
Image width
405
Image height
550
Color space
BlackIsZero
Color depth
16
Compression
LZW
X pixel spacing
0.059753
Y pixel spacing
0.059753
Z pixel spacing
0.059753
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,837

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
AMNH Mammalogy Department
Data uploaded by
Mackenzie Shepard
Publication status
Restricted Download
Download reviewer
Neil Duncan
IP holder
AMNH Dept of Mammalogy
Copyright statement
 Copyright Undetermined
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1317525 (to DM Boyer and ER Seiffert), 1552848 (to DM Boyer) and Duke University Trinity College of Arts and Sciences
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Doug Boyer provided access to these data NSF BCS 1317525 (to DM Boyer and ER Seiffert), 1552848 (to DM Boyer) and Duke University Trinity College of Arts and Sciences. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M84973
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-28252 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)
Creator
Mackenzie Shepard
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2000
Voltage
120
Power
0.01452
Amperage
121
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000084973: Metatarsal 2 [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Mackenzie Shepard
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000084973: Metatarsal 2 [CTImageSeries] [Etc] (this media)