Media 000417807: Whole Specimen
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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GENERAL DETAILS Field Definitions

Media ID
000417807
Media type
Volumetric Image Series
Object element or part
Whole specimen
Object represented
Object taxonomy
Christianacarpum quinquelocularis
Object organization
Side
--
Orientation
--
Short description
--
Full description
BMP image stack (816 slices) extracted from the raw .VOL file created by the reconstruction of the sinograms/projections. These images have been enhanced for 'Brightness/Contrast'. This specimen's (F55) dataset was cut from a larger CT dataset.
Creator
Alan Spencer
Date created
April 04, 2018
Date uploaded
January 28, 2022

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, BMP
File size
154 MB
Image width
561
Image height
711
Color space
--
Color depth
8
Compression
0; BI_RGB; None
X pixel spacing
0.039700
Y pixel spacing
0.039700
Z pixel spacing
0.039700
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
815

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology HMX ST 225, NHMUK Imaging and Analysis Centre (The Natural History Museum, London)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mhnan:2011-pb:212 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
NHMUK Imaging and Analysis Centre (The Natural History Museum, London)
Creator
Alan Spencer
Event date
February 03, 2015
Software
--
Description
MircoCT image stack and derivatives of F55
Description attachment
None
Reference attachment
None
Exposure time
708.00 ms
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
3142
Voltage
210
Power
--
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
Direct (X-Ray photoconductor)
Detector pixels X
2000
Detector pixels size X
0.2
Detector pixels Y
2000
Detector pixels size Y
0.2
Detector configuration
Slot (scanned slot, slit, or spot)
Source object distance
234.143367767334
Source detector distance
1179.8
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000417807: Whole Specimen [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Alan Spencer
Event date
April 04, 2018
Software
--
Description
Extraction of BMP files fro VOL file.
Description attachment
None

Media produced by this event on MorphoSource

Media 000417807: Whole Specimen [CTImageSeries] [CT] (this media)