Media 000077942: Navicular
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
AMNH:Mammals:M-90189 Pan troglodytes troglodytes
Managed by
AMNH Mammalogy Department

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Media Display

Related Media (1)

Media produced from the same original imaging that created Media 000077942 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000077942 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

Private media inaccessible with current permissions

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000077942
Media type
Mesh
Object element or part
Navicular
Object represented
AMNH:Mammals:M-90189
Object taxonomy
Pan troglodytes troglodytes
Object organization
AMNH Mammal Collections
Side
Right
Orientation
--
Short description
Navicular
Full description
Migrated MorphoSource 1 Media File Title: Navicular Migrated MorphoSource 1 Media Group Title: Raw image data Migrated MorphoSource 1 Media Group Description: Any 3D surface uploaded for this specimen/element was produced with either the Isosurface or LabelField functions in AMIRA v.5.6 or later, and is best regarded as minimally processed for smoothing and hole filling (unless otherwise noted). If raw image data (i.e., slices) for this specimen/element have been uploaded, they may appear as a single 3D Tiff format file produced in AMIRA v.5.6 or later. This file can be opened in most versions of AMIRA or AVIZO without needing additional input for scale (i.e., the voxel resolution is recognized). This file can also be opened in ImageJ but will require the user to scale the images with provided information on voxel dimensions prior to working with them.
Creator
--
Date created
--
Date uploaded
May 20, 2019

FILE OBJECT DETAILS Field Definitions

File name
Pan-troglodytes-troglodytes-M-AMNH-90189-Nav-R.ply
File format(s)
PLY
File size
269 MB
Points
3494121
Polygons
6991478
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
37.928, 22.728, 19.943
Centroid coordinates
38.631, 74.772, 152.281
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000077941: Navicular [Image] [Etc]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix nanotom m, Molecular Imaging Center (University of Southern California)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
AMNH Mammalogy Department
Data uploaded by
Biren Patel
Publication status
Restricted Download
Download reviewer
Neil Duncan; Biren Patel
IP holder
AMNH Dept of Mammalogy
Copyright statement
 Copyright Undetermined
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
National Science Foundation [BCS 1317047 (to Biren Patel), BCS 1539741 (to Caley Orr)], the L.S.B. Leakey Foundation (to Biren Patel), the Wenner-Gren Foundation (to Caley Orr), and the University of Southern California (to Biren Patel).
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Biren Patel provided access to these data. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M77942
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-90189 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Molecular Imaging Center (University of Southern California)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived private media that exists on MorphoSource but is inaccessible with current user permissions.

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Private media inaccessible with current permissions

STEP 3: IMAGE PROCESSING

Derived private media was processed to create derived Media 000077942: Navicular [Mesh] [Etc] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000077942: Navicular [Mesh] [Etc] (this media)