Media 000092596: Skeleton
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
nhmuk:zoo:S/1982.5.1 Picus viridis
Managed by
Roger Benson

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Related Media (16)

Media produced from the same original imaging that created Media 000092596 (this media). Includes all media associated with this media through an imaging and processing workflow.

Child Media (16)

Derived media that were created from processing Media 000092596 (this media). The media immediately below this media in the imaging and processing workflow.

Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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In Collections

Project
· Public
Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000092596
Media type
Volumetric Image Series
Object element or part
skeleton
Object represented
nhmuk:zoo:S/1982.5.1
Object taxonomy
Picus viridis
Object organization
Natural History Museum (London) Collection Specimens
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: Micro-CT volume and derivative mesh files
Creator
Benson, Roger
Date created
--
Date uploaded
October 28, 2019

FILE OBJECT DETAILS Field Definitions

File name
Picus_viridis_NHMUK_NHMUK_S1982.5.1_8bit_increment2.zip
File format(s)
ZIP archive, TIFF
File size
1.3 GB
Image width
1308
Image height
1736
Color space
BlackIsZero
Color depth
8
Compression
--
X pixel spacing
0.041545
Y pixel spacing
0.041545
Z pixel spacing
0.083090
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,624

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, School of Earth Sciences Xray Tomography (XTM) Facility (University of Bristol)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Roger Benson
Data uploaded by
Roger Benson
Publication status
Open Download
Download reviewer
--
IP holder
Natural History Museum, London (Copyright and License)
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson
Publisher
Benson, Roger
Cite as
Roger Benson provided access to these data originally appearing in Bjarnason A, Benson RBJ. 2021. A 3D geometric morphometric dataset quantifying skeletal variation in birds. MorphoMuseuM. https://doi.org/10.18563/journal.m3.125, the collection of which was funded by the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M92596
MorphoSource DOI
Not assigned
External identifier
--
External media URL
https://data.nhm.ac.uk/object/a63d0b0e-d5d8-4fe6-8ae0-26ac41b21523

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object nhmuk:zoo:S/1982.5.1 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
School of Earth Sciences Xray Tomography (XTM) Facility (University of Bristol)
Creator
Roger Benson, Tom Davies
Event date
February 08, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.354
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2001
Voltage
100
Power
--
Amperage
350
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000092596: Skeleton [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Roger Benson, Tom Davies
Event date
February 08, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000092596: Skeleton [CTImageSeries] [CT] (this media)