Media 000092905: Skeleton
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UMMZ:birds:158790 Hymenops perspicillatus
Managed by
Brett Benz

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Related Media (16)

Media produced from the same original imaging that created Media 000092905 (this media). Includes all media associated with this media through an imaging and processing workflow.

Child Media (16)

Derived media that were created from processing Media 000092905 (this media). The media immediately below this media in the imaging and processing workflow.

Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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In Collections

Team
· Public
Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000092905
Media type
Volumetric Image Series
Object element or part
skeleton
Object represented
UMMZ:birds:158790
Object taxonomy
Hymenops perspicillatus
Object organization
Museum of Zoology, Division of Birds
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: Micro-CT volume and derivative mesh files
Creator
Benson, Roger
Date created
--
Date uploaded
October 29, 2019

FILE OBJECT DETAILS Field Definitions

File name
Hymenops_persipicillata_UMMZ_158790_TIFFs_8bit_increment2.zip
File format(s)
ZIP archive, TIFF
File size
956 MB
Image width
1607
Image height
1667
Color space
BlackIsZero
Color depth
8
Compression
--
X pixel spacing
0.031148
Y pixel spacing
0.031148
Z pixel spacing
0.031148
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
867

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Computed Tomography in Earth & Environmental Sciences (CTEES) (University of Michigan)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Brett Benz
Data uploaded by
Roger Benson
Publication status
Restricted Download
Download reviewer
Brett Benz
IP holder
University of Michigan Museum of Zoology (Copyright and License)
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson
Publisher
Benson, Roger
Cite as
Roger Benson provided access to these data originally appearing in Bjarnason A, Benson RBJ. 2021. A 3D geometric morphometric dataset quantifying skeletal variation in birds. MorphoMuseuM. https://doi.org/10.18563/journal.m3.125, the collection of which was funded by the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M92905
MorphoSource DOI
 10.17602/M2/M92905
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UMMZ:birds:158790 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Computed Tomography in Earth & Environmental Sciences (CTEES) (University of Michigan)
Creator
Roger Benson
Event date
February 08, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.354
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
1801
Voltage
110
Power
--
Amperage
245
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000092905: Skeleton [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Roger Benson
Event date
February 08, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000092905: Skeleton [CTImageSeries] [CT] (this media)