Media 000092993: Tibiotarsus, Fibula
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UMMZ:birds:155483 Ptilonorhynchus violaceus
Managed by
Brett Benz

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Related Media (17)

Media produced from the same original imaging that created Media 000092993 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000092993 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
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Other Related Media (16)

Other media associated with the original imaging that produced Media 000092993 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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Mesh
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In Collections

Team
· Public
Project
· Public

TAGS

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GENERAL DETAILS Field Definitions

Media ID
000092993
Media type
Mesh
Object element or part
tibiotarsus, fibula
Object represented
UMMZ:birds:155483
Object taxonomy
Ptilonorhynchus violaceus
Object organization
Museum of Zoology, Division of Birds
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: Micro-CT volume and derivative mesh files
Creator
Benson, Roger
Date created
--
Date uploaded
October 29, 2019

FILE OBJECT DETAILS Field Definitions

File name
Ptilonorhynchus_violaceus_UMMZ_155483_tibiotarsus_right.ply
File format(s)
PLY
File size
64.3 MB
Points
887823
Polygons
1775406
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
16.044, 11.924, 75.266
Centroid coordinates
49.168, 22.588, 57.126
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000092979: Skeleton [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Computed Tomography in Earth & Environmental Sciences (CTEES) (University of Michigan)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Brett Benz
Data uploaded by
Roger Benson
Publication status
Restricted Download
Download reviewer
Brett Benz
IP holder
University of Michigan Museum of Zoology
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson
Publisher
--
Cite as
Roger Benson provided access to these data originally appearing in Bjarnason A, Benson RBJ. 2021. A 3D geometric morphometric dataset quantifying skeletal variation in birds. MorphoMuseuM. https://doi.org/10.18563/journal.m3.125, the collection of which was funded by the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M92993
MorphoSource DOI
 10.17602/M2/M92993
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UMMZ:birds:155483 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Computed Tomography in Earth & Environmental Sciences (CTEES) (University of Michigan)
Creator
Roger Benson
Event date
February 08, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.267
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2001
Voltage
100
Power
--
Amperage
550
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000092979: Skeleton [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Roger Benson
Event date
February 08, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000092979: Skeleton [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000092979: Skeleton [CTImageSeries] [CT] was processed to create derived Media 000092993: Tibiotarsus, Fibula [Mesh] [Etc] (this media).

Processing Details Field Definitions

Creator
TEMPO team
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000092993: Tibiotarsus, Fibula [Mesh] [Etc] (this media)