Media 000123455: Stained Syrinx And Trachea
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
ยท Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000123455
Media type
Volumetric Image Series
Object element or part
stained syrinx and trachea
Object represented
Object taxonomy
Anseranas semipalmata
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive\\r\\n\\r\\nClarke: \\r\\ncygnus_anseranas_pauxi_: Scans of the dissected trachea and syrinx of Anseranas sempalmata (YPM 137647, scanned with other specimens) for Julia Clarke of The University of Texas at Austin. Specimen scanned by Matthew Colbert on 11 January 2017.\\r\\n\\r\\n16bitTIFF: Scan parameters: NSI scanner. Fein Focus High Power source, 140 kV, 0.13 mA, no filter, Perkin Elmer detector, 0.25 pF gain, 1 fps, 1x1 binning, no flip, source to object 680.0 mm, source to detector 1316.832 mm, continuous CT scan, no frames averaged, 0 skip frames, 1800 projections, 5 gain calibrations, 15 mm calibration phantom, data range [-0.2, 3.0] (grayscales adjusted from NSI defaults), beam-hardening correction = 0.1. Slices flipped and reordered in ImageJ. Voxel size = 133.6 ?m. Total slices = 1849.\\r\\n\\r\\n8bitJPG: 8bit jpg version of the above images.\\r\\n\\r\\n
Creator
--
Date created
--
Date uploaded
June 25, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
512 MB
Image width
702
Image height
282
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.133600
Y pixel spacing
0.133600
Z pixel spacing
0.133600
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,849

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Yale Peabody Museum
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
Gordon and Betty Moore Foundation Grant 4498 to JAC, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Julia Clarke provided access to these data , with data acquisition funded by the Gordon and Betty Moore Foundation Grant 4498 to JAC, and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ypm:vz:137647 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
none
Projections
1800
Voltage
140
Power
--
Amperage
130
Surrounding material
0.25 pF gain
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000123455: Stained Syrinx And Trachea [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000123455: Stained Syrinx And Trachea [CTImageSeries] [Etc] (this media)