Media 000637003: Foot
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000637003
Media type
Mesh
Object element or part
Foot
Object represented
Object taxonomy
Sylvilagus bachmani cinerascens
Side
--
Orientation
--
Short description
Rabbit foot
Full description
Isolated rabbit foot mesh generated from simple thresholding and with minimal additional edits.
Creator
April Neander
Date created
May 16, 2024
Date uploaded
June 14, 2024

FILE OBJECT DETAILS Field Definitions

File name
foot_simple_TH.stl
File format(s)
STL
File size
92.5 MB
Points
965330
Polygons
1927294
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
47.776, 46.998, 18.554
Centroid coordinates
25.513, 28.418, 23.266 (Vertex Mean)
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Computed Tomography in Earth & Environmental Sciences (CTEES) (University of Michigan)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
University of Michigan Museum of Zoology (Copyright and License)
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UMMZ:mammals:93557 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
Computed Tomography in Earth & Environmental Sciences (CTEES) (University of Michigan)
Creator
Roger Benson
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
0.354
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
1801
Voltage
130
Power
--
Amperage
290
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000164470: Whole Body [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Roger Benson
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000164470: Whole Body [CTImageSeries] [CT] was processed with 2 activities to create derived Media 000637003: Foot [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
April Neander
Event date
May 16, 2024
Software
3D Slicer
Description
Isolated rabbit foot STL created with simple thresholding and with minimal edits made to the mesh.
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
3D Slicer
Description
Threshold range 94-255.

Processing Activity 2: Reconstructed Tomography to Mesh

Software
3D Slicer
Description
Foot isolated from the rest of the skeleton using Erase and Islands tools

Media produced by this event on MorphoSource

Media 000637003: Foot [Mesh] [CT] (this media)