Media 000097371: Whole Body, Stage 64
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000097371: Whole Body, Stage 64
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
TAGS
GENERAL DETAILS Field Definitions
Media ID
000097371
Media type
Volumetric Image Series
Object element or part
whole body, stage 64
Object represented
Object taxonomy
Silurana tropicalis
Object organization
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
Migrated MorphoSource 1 Media File Title: zipped tiff stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives Migrated MorphoSource 1 Media Group Description: PMA-stained fluid-preserved tadpole
Creator
--
Date created
--
Date uploaded
December 03, 2019
FILE OBJECT DETAILS Field Definitions
File name
UC_H_002_Xenopus_Stage64.zip
File format(s)
ZIP archive, TIFF
File size
76.5 MB
Image width
419
Image height
455
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.023315
Y pixel spacing
0.023315
Z pixel spacing
0.023315
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,955
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s, UChicago PaleoCT (University of Chicago)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Gayani Senevirathne
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
--
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Gayani Senevirathne and colleagues provided access to these dataoriginally appearing in Senevirathne et al., 2020 (PNAS) , with data collection funded by the Brinson Foundation and the University of Chicago Biological Sciences. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
uc:herps:002
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
UChicago PaleoCT (University of Chicago)
Creator
Stephanie Baumgart, Gayani Senevirathne
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
200
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
900
Voltage
90
Power
0.0162
Amperage
180
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000097371: Whole Body, Stage 64 [CTImageSeries] [Etc] (this media).
Processing Details Field Definitions
Creator
Stephanie Baumgart, Gayani Senevirathne
Event date
--
Software
--
Description
--
Description attachment
None