Media 000101109: Head
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000101109: Head
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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GENERAL DETAILS Field Definitions
Media ID
000101109
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Afrogecko porphyreus
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 2558\\r\\n\\r\\nBauer:\\r\\n175308A: Scans of the head of Afrogecko porphyreus (CAS 175308) for Aaron Bauer of Villanova University. Specimen scanned by Jessie Maisano 13 September 2011. \\r\\n\\r\\nscan parameters: Xradia. 0.5X objective, 70kV, 10W, 0.75s acquisition time, detector 121.8 mm, source -37.5 mm, XYZ [3104, 30236, 1474], camera bin 2, angles ±105, 736 views, 1.0 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 0.75s). Crop-and-fill plugin applied. Reconstructed with center shift -10.5, beam hardening 0, theta -93, byte scaling [-15, 70], binning 1, recon filter smooth (kernel size = 0.8). Total slices = 835.\\r\\n\\r\\n16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 13.32 microns.\\r\\n
Creator
--
Date created
--
Date uploaded
February 18, 2020
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
447 MB
Image width
609
Image height
517
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.013320
Y pixel spacing
0.013320
Z pixel spacing
0.013320
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
835
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
California Academy of Sciences
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DEB-0844523, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Aaron Bauer provided access to these data , with data collection funded by NSF DEB-0844523 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
CAS:HERP:175308
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
0.75
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
736
Voltage
70
Power
0.01
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000101109: Head [CTImageSeries] [Etc] (this media).
Processing Details Field Definitions
Creator
Jessie Maisano
Event date
--
Software
--
Description
--
Description attachment
None