Media 000636667: Tail
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
usnm:Amphibians & Reptiles:29215 Ungaliophis panamensis
Managed by
Collection Manager

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Media produced from the same original imaging that created Media 000636667 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000636667
Media type
Volumetric Image Series
Object element or part
tail
Object represented
usnm:Amphibians & Reptiles:29215
Object taxonomy
Ungaliophis panamensis
Object organization
NMNH - Division of Amphibians and Reptiles
Side
--
Orientation
--
Short description
HRXCT scan -- tail
Full description
University of Texas High-Resolution X-ray CT Facility Archive 2385 Smith: 29215B: Scans of the tail of Ungaliophis panamensis (USNM 29215; Misterioso River, Lock Site No. 2B, Nicaragua) for Krister Smith of the Museum und Forschungsinstitut Senckenberg. Specimen scanned by Jessie Maisano 8 February 2011. scan parameters: Xradia. 0.5X objective, 70kV, 10W, 1s acquisition time, detector 73.25 mm, source -66.09 mm, XYZ [752, 19951, -2386], camera bin 2, angles ±107, 750 views, 1 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 1s). Reconstructed with center shift -1, beam hardening 0, theta 0, byte scaling [-10, 100], binning 1, recon filter smooth (kernel size = 0.8). Total slices = 471. 29215A.rcp: Xradia recipe with scan parameters. 16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 26.74 microns.
Creator
Jessie Maisano
Date created
February 08, 2011
Date uploaded
June 12, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
607 MB
Image width
994
Image height
996
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.026740
Y pixel spacing
0.026740
Z pixel spacing
0.026740
Pixel spacing units
Um
Slice thickness
--
Number of images in set
471

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
0 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Collection Manager
Data uploaded by
Lauren Nguyen
Publication status
Restricted Download
Download reviewer
Collection Manager; Jessie Maisano
IP holder
Smithsonian Institution, National Museum of Natural History
Copyright statement
 Copyright Undetermined
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for Krister Smith. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/636667
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object usnm:Amphibians & Reptiles:29215 was imaged to create this media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Event date
February 08, 2011
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
--
Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
--
X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

Media produced by this event on MorphoSource

Media 000636667: Tail [CTImageSeries] [CT] (this media)