Media 000637653: Left Petrosal
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
amnh:mammals:143513 Lagenorhynchus acutus
Managed by
AMNH Mammalogy Department

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Media produced from the same original imaging that created Media 000637653 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Team
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GENERAL DETAILS Field Definitions

Media ID
000637653
Media type
Volumetric Image Series
Object element or part
left petrosal
Object represented
amnh:mammals:143513
Object taxonomy
Lagenorhynchus acutus
Object organization
AMNH Mammal Collections
Side
--
Orientation
--
Short description
HRXCT scan of left petrosal
Full description
University of Texas High-Resolution X-ray CT Facility Archive 2444 Geisler: 143513A: Scans of the left petrosal of Lagenorhynchus acutus (AMNH 143513) for Jonathan Geisler of the New York College of Osteopathic Medicine. Specimen scanned by Jessie Maisano 25 April 2011. scan parameters: Xradia. 0.5X objective, 80kV, 10W, 1.5s acquisition time, detector 145 mm, source -42.9 mm, XYZ [-56, 511, 2144], camera bin 2, angles ±103, 516 views, 2.1 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 1s). Crop-and-fill plugin applied. Reconstructed with center shift -1, beam hardening 0.05, theta 0, byte scaling [-15, 48], binning 1, recon filter smooth (kernel size = 0.8). Total slices = 833. 143513A.rcp: Xradia recipe with scan parameters. 16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 12.89 microns.
Creator
Jessie Maisano
Date created
April 25, 2011
Date uploaded
June 17, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
1.12 GB
Image width
1012
Image height
1024
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.012890
Y pixel spacing
0.012890
Z pixel spacing
0.012890
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
833

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
AMNH Mammalogy Department
Data uploaded by
Zachariah Saiz
Publication status
Restricted Download
Download reviewer
Jessie Maisano; Neil Duncan
IP holder
AMNH Dept of Mammalogy
Copyright statement
 Copyright Undetermined
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, DEB-1025260
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant DEB-1025260 to Jonathan Geisler. Funding for data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/637653
MorphoSource DOI
Not assigned
External identifier
--
External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object amnh:mammals:143513 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
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Description attachment
None
Reference attachment
None
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Pixel spacing calibration
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Frame averaging
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000637653: Left Petrosal [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
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Event date
--
Software
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Description
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Description attachment
None

Media produced by this event on MorphoSource

Media 000637653: Left Petrosal [CTImageSeries] [CT] (this media)