Media 000637675: Left Petrosal
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

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Project
· Public
Team
· Public

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GENERAL DETAILS Field Definitions

Media ID
000637675
Media type
Volumetric Image Series
Object element or part
left petrosal
Object represented
Object taxonomy
Pontoporia blainvillei
Object organization
Side
--
Orientation
--
Short description
HRXCT scan of left petrosal
Full description
University of Texas High-Resolution X-ray CT Facility Archive 2444 Geisler: 254554A: Scans of the left petrosal of Pontoporia blainvillei (AMNH 254554) for Jonathan Geisler of the New York College of Osteopathic Medicine. Specimen scanned by Jessie Maisano 25 April 2011. scan parameters: Xradia. 0.5X objective, 80kV, 10W, 1.5s acquisition time, detector 145 mm, source -42.9 mm, XYZ [3219, -1479, -351], camera bin 2, angles ±103, 516 views, 2.1 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 1s). Crop-and-fill plugin applied. Reconstructed with center shift -1, beam hardening 0.1, theta 0, byte scaling [-12, 50], binning 1, recon filter smooth (kernel size = 0.8). Total slices = 768. 254554A.rcp: Xradia recipe with scan parameters. 16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 12.89 microns.
Creator
Jessie Maisano
Date created
April 25, 2011
Date uploaded
June 17, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
1.02 GB
Image width
1012
Image height
1024
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.012890
Y pixel spacing
0.012890
Z pixel spacing
0.012890
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
768

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
AMNH Dept of Mammalogy
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DEB-1025260, DBI-1902242
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant DEB-1025260 to Jonathan Geisler. oUTCT provided access to these data, funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
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External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object amnh:mammals:254554 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
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Event date
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Software
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Description
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Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Detector pixels Y
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000637675: Left Petrosal [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
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Description
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Description attachment
None

Media produced by this event on MorphoSource

Media 000637675: Left Petrosal [CTImageSeries] [CT] (this media)