Media 000637723: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
NHMZ:30040 Zygaspis kafuensis
Managed by
Jessie Maisano

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Media produced from the same original imaging that created Media 000637723 (this media). Includes all media associated with this media through an imaging and processing workflow.

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GENERAL DETAILS Field Definitions

Media ID
000637723
Media type
Volumetric Image Series
Object element or part
head
Object represented
NHMZ:30040
Object taxonomy
Zygaspis kafuensis
Object organization
Natural History Museum of Zimbabwe
Side
--
Orientation
--
Short description
HRXCT scan of head
Full description
University of Texas High-Resolution X-ray CT Facility Archive Lewis: 30040A: Scans of the head of Zygaspis kafuensis (NMZB-UM 30040, paratype; Chunga, Kafue National Park, Zambia) for Patrick Lewis of Sam Houston State. Specimen scanned by Jessie Maisano 1 December 2014. Scanned in two parts and stitched using Xradia plugin. scan parameters: Xradia. 4X objective, 90kV, 10W, 3.5s acquisition time, detector 10.3 mm, source -66.7 mm, XYZ [2573, 32464, 469], camera bin 2, angles ±180 1261 views, 0.35 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 3.5s). Reconstructed with center shift 3.75 or 3.5, beam hardening 1, theta 70, byte scaling [-20, 300], binning 1, recon filter smooth (kernel size = 0.6). Total slices = 1496. 30040A.rcp: Xradia recipe with scan parameters. 16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 5.84 microns.
Creator
Jessie Maisano
Date created
December 01, 2014
Date uploaded
June 17, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
1.94 GB
Image width
975
Image height
985
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
5.840000
Y pixel spacing
5.840000
Z pixel spacing
5.840000
Pixel spacing units
Um
Slice thickness
--
Number of images in set
1,496

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Zachariah Saiz
Publication status
Restricted Download
Download reviewer
Jessie Maisano
IP holder
Natural History Museum of Zimbabwe
Copyright statement
 In Copyright
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for Patrick Lewis. oUTCT provided access to these data, funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/637723
MorphoSource DOI
Not assigned
External identifier
--
External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object NHMZ:30040 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
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Event date
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Software
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Description
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Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Optical magnification
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000637723: Head [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000637723: Head [CTImageSeries] [CT] (this media)