Media 000656566: Head
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000656566: Head
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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GENERAL DETAILS Field Definitions
Media ID
000656566
Media type
Volumetric Image Series
Object element or part
Head
Object represented
Object taxonomy
Gnypetoscincus queenslandiae
Object organization
Side
--
Orientation
--
Short description
HRXCT scan of head
Full description
University of Texas High-Resolution X-ray CT Facility Archive
Gelnaw:
269115A: Scans of the head of Gnypetoscincus queenslandiae (MVZ 269115; Australia, Queensland; Carbine Uplands) for Will Gelnaw of The University of Texas. Specimen scanned by Jessie Maisano 4 December 2014.
scan parameters: Xradia. LFOV objective, 70kV, 10W, 2s acquisition time, detector 137 mm, source -41.5 mm, XYZ [1248, 10209, -2158], camera bin 2, angles ±180, 1261 views, 1.0 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 2s). Reconstructed with center shift -5 or -4.75, beam hardening 0.4, theta -6, byte scaling [-5, 120], binning 1, recon filter smooth (kernel size = 0.5). Total slices = 1349.
269115A.rcp: Xradia recipe with scan parameters.
16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 15.64 microns.
Creator
Jessie Maisano
Date created
December 04, 2014
Date uploaded
August 15, 2024
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
1.39 GB
Image width
936
Image height
691
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
15.640000
Y pixel spacing
15.640000
Z pixel spacing
15.640000
Pixel spacing units
Um
Slice thickness
--
Number of images in set
1,349
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
These data were made available by Will Gelnaw. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
mvz:amphibian and reptile specimens:269115
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Event date
December 04, 2014
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Amperage
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000656566: Head [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000656566: Head [CTImageSeries] [CT] (this media)