Media 000656566: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
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GENERAL DETAILS Field Definitions

Media ID
000656566
Media type
Volumetric Image Series
Object element or part
Head
Object taxonomy
Gnypetoscincus queenslandiae
Side
--
Orientation
--
Short description
HRXCT scan of head
Full description
University of Texas High-Resolution X-ray CT Facility Archive Gelnaw: 269115A: Scans of the head of Gnypetoscincus queenslandiae (MVZ 269115; Australia, Queensland; Carbine Uplands) for Will Gelnaw of The University of Texas. Specimen scanned by Jessie Maisano 4 December 2014. scan parameters: Xradia. LFOV objective, 70kV, 10W, 2s acquisition time, detector 137 mm, source -41.5 mm, XYZ [1248, 10209, -2158], camera bin 2, angles ±180, 1261 views, 1.0 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 2s). Reconstructed with center shift -5 or -4.75, beam hardening 0.4, theta -6, byte scaling [-5, 120], binning 1, recon filter smooth (kernel size = 0.5). Total slices = 1349. 269115A.rcp: Xradia recipe with scan parameters. 16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 15.64 microns.
Creator
Jessie Maisano
Date created
December 04, 2014
Date uploaded
August 15, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
1.39 GB
Image width
936
Image height
691
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
15.640000
Y pixel spacing
15.640000
Z pixel spacing
15.640000
Pixel spacing units
Um
Slice thickness
--
Number of images in set
1,349

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
These data were made available by Will Gelnaw. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
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External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mvz:amphibian and reptile specimens:269115 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Event date
December 04, 2014
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000656566: Head [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
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Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000656566: Head [CTImageSeries] [CT] (this media)