Media 000380595: Navicular
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000380595
Media type
Mesh
Object element or part
navicular
Object represented
Object taxonomy
Dryomomys szalayi
Object organization
Side
Right
Orientation
--
Short description
--
Full description
--
Creator
doug boyer
Date created
May 04, 2018
Date uploaded
August 28, 2021

FILE OBJECT DETAILS Field Definitions

File name
UM_41870-78_Navicular.ply
File format(s)
PLY
File size
3.84 MB
Points
60311
Polygons
120582
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
0.919, 0.887, 0.721
Centroid coordinates
7.432, 11.112, 62.188
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (3 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 40, Stony Brook University Center for Biotechnology (Stony Brook University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Regents of the University of Michigan
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS-1552848
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ummp:vp:41870 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
Stony Brook University Center for Biotechnology (Stony Brook University)
Creator
doug boyer
Event date
June 22, 2011
Software
scanco medical
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
Transmission
Detector type
Scintillator (Phosphor used)
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
Area (single or tiled detector)
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
No
Optical magnification
No
Acquisition type
Sequenced

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 2 activities to create derived Media 000380587: Navicular [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
doug boyer
Event date
June 22, 2011
Software
Avizo; scano medical
Description
--
Description attachment
None

Processing Activity 1: Reconstruction

Software
scanco medical
Description

Processing Activity 2: Crop

Software
Avizo
Description

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000380587: Navicular [CTImageSeries] [CT] was processed with 1 activity to create derived Media 000380595: Navicular [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
doug boyer
Event date
May 04, 2018
Software
Avizo; scano medical
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
Avizo
Description

Media produced by this event on MorphoSource

Media 000380595: Navicular [Mesh] [CT] (this media)